Index

A

angle\_coeff angle\_style angle\_style charmm angle\_style class2 angle\_style cosine angle\_style cosine/delta angle\_style cosine/periodic angle\_style cosine/shift angle\_style cosine/shift/exp angle\_style cosine/squared

angle\_style dipole angle\_style fourier angle\_style fourier/simple angle\_style harmonic angle\_style hybrid angle\_style none angle\_style quartic angle\_style sdk angle\_style table atom\_modify atom\_style

B

balance bond\_coeff bond\_style bond\_style class2 bond\_style fene bond\_style fene/expand bond\_style harmonic bond\_style harmonic/shift

bond\_style harmonic/shift/cut bond\_style hybrid bond\_style morse bond\_style none bond\_style nonlinear bond\_style quartic bond\_style table boundary box

C

change\_box clear coarsegraining communicate compute compute ackland/atom compute angle/local compute atom/molecule compute basal/atom compute body/local compute bond/local compute centro/atom compute cluster/atom compute cna/atom compute com compute com/molecule compute contact/atom compute coord/atom compute damage/atom compute dihedral/local compute displace/atom compute erotate/asphere compute erotate/multisphere compute erotate/rigid compute erotate/sphere compute erotate/sphere/atom compute erotate/superquadric compute event/displace compute group/group compute gyration compute gyration/molecule compute heat/flux compute improper/local compute inertia/molecule compute ke compute ke/atom compute ke/atom/eff compute ke/eff compute ke/multisphere compute ke/rigid

compute meso\_e/atom compute meso\_rho/atom compute meso\_t/atom compute msd compute msd/molecule compute msd/nongauss compute neighbor/atom compute nparticles/tracer/region compute pair compute pair/gran/local compute pair/local compute pe compute pe/atom compute pressure compute property/atom compute property/local compute property/molecule compute rdf compute reduce compute rigid compute slice compute stress/atom compute temp compute temp/asphere compute temp/com compute temp/deform compute temp/deform/eff compute temp/eff compute temp/partial compute temp/profile compute temp/ramp compute temp/region compute temp/region/eff compute temp/rotate compute temp/sphere compute ti compute voronoi/atom compute\_modify create\_atoms create\_box create\_multisphere\_clump

D

delete\_atoms delete\_bonds dielectric dihedral\_coeff dihedral\_style dihedral\_style charmm dihedral\_style class2 dihedral\_style cosine/shift/exp dihedral\_style fourier dihedral\_style harmonic dihedral\_style helix dihedral\_style hybrid

dihedral\_style multi/harmonic dihedral\_style nharmonic dihedral\_style none dihedral\_style opls dihedral\_style quadratic dihedral\_style table dimension displace\_atoms dump dump custom/vtk dump image dump molfile dump\_modify

E

echo	extract\_surface extrude\_surface

F

fix fix adapt fix addforce fix addtorque fix append/atoms fix atc fix ave/atom fix ave/correlate fix ave/euler fix ave/euler/region fix ave/histo fix ave/spatial fix ave/time fix aveforce fix balance fix bond/break fix bond/create fix bond/swap fix box/relax fix break/particle fix buoyancy fix check/timestep/gran fix chem/shrink fix chem/shrink/core fix colvars fix couple/cfd/chemistry fix couple/cfd/convection fix couple/cfd/deform fix couple/cfd/dissolve fix couple/cfd/fluidproperties fix couple/cfd/recurrence fix deform fix deposit fix drag fix dt/reset fix efield fix enforce2d fix evaporate fix execute fix external fix forcecontrol/region fix freeze fix gcmc fix gld fix gravity fix heat fix heat/gran fix heat/gran/radiation fix imd fix indent fix insert/pack fix insert/pack/dense fix insert/pack/face fix insert/rate/region fix insert/stream fix insert/stream/moving fix langevin fix langevin/eff fix lb/fluid fix lb/momentum fix lb/pc fix lb/rigid/pc/sphere fix lb/viscous fix limit/property/atom fix limit/vel fix lineforce fix massflow/mesh fix massflow/mesh/face fix meanfreetime fix mesh/6dof fix mesh/surface fix mesh/surface/stress fix mesh/surface/stress/servo fix meso fix meso/stationary fix momentum fix move fix move/mesh fix msst fix multisphere fix neb

fix nph/asphere fix nph/sphere fix nphug fix npt/asphere fix npt/sphere fix nve fix nve/asphere fix nve/asphere/noforce fix nve/body fix nve/eff fix nve/limit fix nve/line fix nve/noforce fix nve/sphere fix nve/superquadric fix nve/tri fix nvt fix nvt/asphere fix nvt/eff fix nvt/sllod fix nvt/sllod/eff fix nvt/sphere fix orient/fcc fix particledistribution/discrete fix particletemplate/fragments fix particletemplate/multiplespheres fix particletemplate/multisphere fix particletemplate/sphere fix particletemplate/superquadric fix phonon fix planeforce fix pour/legacy fix press/berendsen fix print fix property/atom/cumulativetracer fix property/atom/polydispparcel fix property/atom/timetracer fix property/atom/tracer fix property/atom/tracer/stream fix property/global fix qeq/comb fix qeq/reax fix reax/bonds fix reax/c/species fix recenter fix remove fix restrain fix rigid fix scale/diameter fix setforce fix shake fix smd fix speedcontrol fix sph/density/continuity fix sph/density/corr fix sph/density/summation fix sph/pressure fix spring fix spring/rg fix spring/self fix srd fix store/force fix store/state fix temp/berendsen fix temp/rescale fix temp/rescale/eff fix thermal/conductivity fix ti/rs fix ti/spring fix tmd fix ttm fix tune/kspace fix viscosity fix viscous fix wall/gran fix wall/lj93 fix wall/piston fix wall/reflect fix wall/region fix wall/region/sph fix wall/srd fix\_modify

G

group

group2ndx

I

if improper\_coeff improper\_style improper\_style class2 improper\_style cossq improper\_style cvff

improper\_style fourier improper\_style harmonic improper\_style hybrid improper\_style none improper\_style ring improper\_style umbrella include

J

jump

K

kspace\_modify

kspace\_style

L

label

lattice log

M

mass min\_modify

min\_style minimize modify\_timing

N

neb neigh\_modify

neighbor newton next

P

package pair\_coeff pair\_modify pair\_style pair\_style adp pair\_style airebo pair\_style awpmd/cut pair\_style beck pair\_style body pair\_style bop pair\_style born pair\_style brownian pair\_style buck pair\_style buck/long/coul/long pair\_style colloid pair\_style comb pair\_style coul/cut pair\_style coul/diel pair\_style dpd pair\_style dsmc pair\_style eam pair\_style edip pair\_style eff/cut pair\_style eim pair\_style gauss pair\_style gayberne pair\_style gran pair\_style hbond/dreiding/lj pair\_style hybrid pair\_style kim pair\_style lcbop pair\_style line/lj pair\_style list pair\_style lj/charmm/coul/charmm pair\_style lj/class2 pair\_style lj/cubic pair\_style lj/cut pair\_style lj/cut/dipole/cut pair\_style lj/expand pair\_style lj/gromacs

pair\_style lj/long/coul/long pair\_style lj/sdk pair\_style lj/sf pair\_style lj/smooth pair\_style lj/smooth/linear pair\_style lj96/cut pair\_style lubricate pair\_style lubricateU pair\_style meam pair\_style mie/cut pair\_style morse pair\_style nb3b/harmonic pair\_style nm/cut pair\_style none pair\_style peri/pmb pair\_style reax pair\_style reax/c pair\_style resquared pair\_style soft pair\_style sph pair\_style sph/artVisc/tensCorr pair\_style sph/heatconduction pair\_style sph/idealgas pair\_style sph/lj pair\_style sph/rhosum pair\_style sph/taitwater pair\_style sph/taitwater/morris pair\_style sw pair\_style table pair\_style tersoff pair\_style tersoff/mod pair\_style tersoff/zbl pair\_style tri/lj pair\_style yukawa pair\_style yukawa/colloid pair\_style zbl pair\_write partition prd print processors

Q

quit

R

read\_data read\_dump read\_restart region replicate

rerun reset\_timestep restart run run\_style

S

set shell

special\_bonds suffix

T

tad temper thermo

thermo\_log thermo\_modify thermo\_style timestep

U

uncompute undump

unfix units

V

variable

velocity

W

write\_data

write\_dump write\_restart